BioDB - Biological Database platform

 

State Key Laboratory of Silkworm Genome Biology, Southwest University

Institute of Sericulture and Systems Biology, Southwest University

College of Computer & Information Science, Southwest University

College of Animal Science and Technology, Southwest University

College of Agronomy and Biotechnology, Southwest University


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What is BioDB?


BioDB is a database system and platform built by scientific research teams at the State Key Laboratory of Silkworm Genome Biology (SKLSGB), Southwest University (SWU) for storing, sharing and analyzing biological data of silkworm, mulberry, microorganisms and other organisms. Please do not hesitate to CONTACT US if you have any questions.

 

SilkDB is a database of the integrated genome resource for the silkworm, Bombyx mori. This database provides access to not only genomic data including functional annotation of genes, gene products and chromosomal mapping, but also extensive biological information such as microarray expression data, ESTs and corresponding references. SilkDB will be useful for the silkworm research community as well as comparative genomics.
SilkPathDB is a comprehensive resource for studying on pathogens of silkworm, including microsporidia, fungi, bacteria and virus. SilkPathDB provides access to not only genomic data including functional annotation of genes and gene products, but also extensive biological information for gene expression data and corresponding researches. SilkPathDB will be help with researches on pathogens of silkworm as well as other Lepidoptera insects.
MorusDB is a database for genomic and biological information of the mulberry Morus notabilis C.K.Schneid. (Chuansang). MorusDB provides open access to not only the genomic data of mulberry including genome sequences, gene structures and functions, transposable elements, but also the biological transcriptome and EST data.
MnTEdb is focused on the TE information in mulberry. A total of 5925 TEs have been identified. They can be classified into 13 superfamily, 1062 family. This database is a comprehensive and easy to use database for users. The goals of this database are helping researchers to fully and efficiently use the TE data of mulberry plants. It will be useful for the study of the origin, amplification, and evolutionary dynamic of TEs and the comparative analysis between different species.
PamulDB is a comprehensive resource for studying on pathogens of Pasteurella multocida. PamulDB provides access to not only genomic data including functional annotation of genes and gene products, but also extensive biological information for gene expression data and corresponding researches. PamulDB will be help with researches on Pasteurella multocida.
qPrimerDB is currently the most comprehensive primer database with a web frontend providing gene-specific and pre-computed qPCR primer pairs across 148 important genomes (including human, mice, zebrafish, yeast, Arabidopsis thaliana, rice, maize, wheat, etc). The qPDB provides an interactive and information-rich web graphical interface to display search and BLAST results as table-based descriptions and associated links.The qPDB thus constitutes a valuable resource for gene expression analysis and will save precious time for researchers.