Find Motifs

Find motifs in protein or DNA sequences

FindMotif, by running MEME[1], takes as input a group of DNA or protein sequences and outputs as many motifs as requested.

Restrictions: At most 100 sequences per submission.

Enter/paste DNA/PROTEIN sequences in FASTA format:

or enter/paste PamulDB identifiers, e.g. UR07_02235.p01 UR07_04575.p01 UR07_05690.p01:

or submit DNA/PROTEIN sequence file in FASTA format:
Sequence type: | Distribution model: | Minimum width: | Maximum width: | Maximu motifs: | Minimum sites:
[1] Timothy L. Bailey, Mikael Boden, Fabian A. Buske, et al. 2009. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Research, 37:W202-W208.